IL_9G8O_014
3D structure
- PDB id
- 9G8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 40S ribosome bound by a SKI238-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGUG*UAGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8O_014 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3888
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
9G8O|1|S2|C|151
9G8O|1|S2|U|152
9G8O|1|S2|G|153
9G8O|1|S2|U|154
9G8O|1|S2|G|155
*
9G8O|1|S2|U|163
9G8O|1|S2|A|164
9G8O|1|S2|G|165
9G8O|1|S2|A|166
9G8O|1|S2|G|167
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
Coloring options: