IL_9G8O_037

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACCGC*GAGGC

Length

11 nucleotides

Bulged bases

9G8O|1|S2|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8O_037 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5388

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8O|1|S2|G|874
9G8O|1|S2|A|875
9G8O|1|S2|C|876
9G8O|1|S2|C|877
9G8O|1|S2|G|878
9G8O|1|S2|C|879
*
9G8O|1|S2|G|907
9G8O|1|S2|A|908
9G8O|1|S2|G|909
9G8O|1|S2|G|910
9G8O|1|S2|C|911

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SH

40S ribosomal protein S7