IL_9G8O_071

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9G8O|1|S2|A|1580, 9G8O|1|S2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8O|1|S2|G|1550
9G8O|1|S2|U|1551
9G8O|1|S2|G|1552
9G8O|1|S2|C|1553
9G8O|1|S2|C|1554
9G8O|1|S2|U|1555
9G8O|1|S2|A|1556
9G8O|1|S2|C|1557
9G8O|1|S2|C|1558
*
9G8O|1|S2|G|1577
9G8O|1|S2|U|1578
9G8O|1|S2|A|1579
9G8O|1|S2|A|1580
9G8O|1|S2|C|1581
9G8O|1|S2|C|1582

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain A

Helicase SKI2W

Chain SD

40S ribosomal protein S3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29