IL_9GGR_025
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9GGR|1|0|A|532, 9GGR|1|0|U|534, 9GGR|1|0|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_025 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.2732
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|0|G|515
9GGR|1|0|U|516
9GGR|1|0|G|517
9GGR|1|0|C|518
9GGR|1|0|C|519
9GGR|1|0|A|520
9GGR|1|0|G|521
*
9GGR|1|0|C|528
9GGR|1|0|G|529
9GGR|1|0|G|530
9GGR|1|0|U|531
9GGR|1|0|A|532
9GGR|1|0|A|533
9GGR|1|0|U|534
9GGR|1|0|A|535
9GGR|1|0|C|536
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Small ribosomal subunit protein uS3
- Chain 3
- Small ribosomal subunit protein uS4
- Chain A
- Transfer RNA; tRNA
- Chain E
- Small ribosomal subunit protein uS12
- Chain w
- messenger RNA
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