IL_9GGR_090

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9GGR|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_090 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2033

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GGR|1|AA|G|446
9GGR|1|AA|G|447
9GGR|1|AA|A|448
9GGR|1|AA|G|449
9GGR|1|AA|G|450
*
9GGR|1|AA|C|483
9GGR|1|AA|G|484
9GGR|1|AA|U|485
9GGR|1|AA|U|486
9GGR|1|AA|A|487
9GGR|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS4

Chain AO

Small ribosomal subunit protein bS16

Chain U

Large ribosomal subunit protein bL9