IL_9GGR_099

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_099 not in the Motif Atlas

Geometric match to IL_1KUQ_001

Geometric discrepancy: 0.1454

The information below is about IL_1KUQ_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

9GGR|1|AA|G|654
9GGR|1|AA|A|655
*
9GGR|1|AA|U|751
9GGR|1|AA|G|752
9GGR|1|AA|A|753
9GGR|1|AA|C|754

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

Small ribosomal subunit protein uS8

Chain AN

Small ribosomal subunit protein uS15