IL_9GGR_116
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 9GGR|1|AA|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_116 not in the Motif Atlas
- Homologous match to IL_4LFB_046
- Geometric discrepancy: 0.1607
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
9GGR|1|AA|U|1060
9GGR|1|AA|G|1061
*
9GGR|1|AA|C|1195
9GGR|1|AA|A|1196
9GGR|1|AA|A|1197
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain A3
- Transfer RNA; tRNA
- Chain AC
- Small ribosomal subunit protein uS3
- Chain AE
- Small ribosomal subunit protein uS5
- Chain AJ
- Small ribosomal subunit protein uS10
- Chain AM
- Small ribosomal subunit protein uS14
- Chain w
- messenger RNA
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