IL_9GGR_134

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_134 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.1221

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GGR|1|AV|G|24
9GGR|1|AV|U|25
9GGR|1|AV|G|26
9GGR|1|AV|G|27
9GGR|1|AV|A|28
9GGR|1|AV|U|29
9GGR|1|AV|G|30
*
9GGR|1|AV|C|510
9GGR|1|AV|U|511
9GGR|1|AV|G|512
9GGR|1|AV|A|513
9GGR|1|AV|A|514
9GGR|1|AV|A|515
9GGR|1|AV|C|516

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Al

Large ribosomal subunit protein bL20

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32