IL_9GGR_137

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

9GGR|1|AV|U|100, 9GGR|1|AV|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_137 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.3159

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9GGR|1|AV|G|81
9GGR|1|AV|U|82
9GGR|1|AV|A|83
9GGR|1|AV|A|84
9GGR|1|AV|G|85
*
9GGR|1|AV|C|97
9GGR|1|AV|G|98
9GGR|1|AV|U|99
9GGR|1|AV|U|100
9GGR|1|AV|A|101
9GGR|1|AV|U|102
9GGR|1|AV|A|103
9GGR|1|AV|A|104
9GGR|1|AV|C|105

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ap

Large ribosomal subunit protein uL24

Chain At

Large ribosomal subunit protein uL29