IL_9GGR_142

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9GGR|1|AV|U|276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_142 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.406

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GGR|1|AV|C|274
9GGR|1|AV|C|275
9GGR|1|AV|U|276
9GGR|1|AV|G|277
9GGR|1|AV|A|278
9GGR|1|AV|A|279
9GGR|1|AV|U|280
9GGR|1|AV|C|281
*
9GGR|1|AV|G|359
9GGR|1|AV|U|360
9GGR|1|AV|G|361
9GGR|1|AV|A|362
9GGR|1|AV|G|363

Current chains

Chain AV

23S ribosomal RNA

Nearby chains