IL_9GGR_158

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9GGR|1|AV|U|846, 9GGR|1|AV|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_158 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3051

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9GGR|1|AV|A|844
9GGR|1|AV|A|845
9GGR|1|AV|U|846
9GGR|1|AV|U|847
9GGR|1|AV|C|848
*
9GGR|1|AV|G|930
9GGR|1|AV|U|931
9GGR|1|AV|U|932
9GGR|1|AV|A|933
9GGR|1|AV|U|934

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Au

Large ribosomal subunit protein uL30