3D structure

PDB id
9GGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class II
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGGUAGAG*CUGCGAAUAC
Length
19 nucleotides
Bulged bases
9GGR|1|AV|G|914
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GGR|1|AV|G|856
9GGR|1|AV|G|857
9GGR|1|AV|G|858
9GGR|1|AV|G|859
9GGR|1|AV|U|860
9GGR|1|AV|A|861
9GGR|1|AV|G|862
9GGR|1|AV|A|863
9GGR|1|AV|G|864
*
9GGR|1|AV|C|912
9GGR|1|AV|U|913
9GGR|1|AV|G|914
9GGR|1|AV|C|915
9GGR|1|AV|G|916
9GGR|1|AV|A|917
9GGR|1|AV|A|918
9GGR|1|AV|U|919
9GGR|1|AV|A|920
9GGR|1|AV|C|921

Current chains

Chain AV
23S ribosomal RNA

Nearby chains

Chain AW
5S ribosomal RNA; 5S rRNA
Chain Ah
50S ribosomal protein L16
Chain Ar
Large ribosomal subunit protein bL27
Chain Au
Large ribosomal subunit protein uL30

Coloring options:

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