IL_9GGR_170

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9GGR|1|AV|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_170 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1852

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9GGR|1|AV|U|1018
9GGR|1|AV|U|1019
9GGR|1|AV|A|1020
9GGR|1|AV|A|1021
9GGR|1|AV|G|1022
9GGR|1|AV|U|1023
9GGR|1|AV|G|1024
*
9GGR|1|AV|C|1140
9GGR|1|AV|U|1141
9GGR|1|AV|A|1142
9GGR|1|AV|A|1143
9GGR|1|AV|A|1144

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Ae

Large ribosomal subunit protein uL13

Chain Az

Large ribosomal subunit protein bL36A