IL_9GGR_181

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_181 not in the Motif Atlas

Geometric match to IL_8VTW_065

Geometric discrepancy: 0.1349

The information below is about IL_8VTW_065

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9GGR|1|AV|G|1310
9GGR|1|AV|G|1311
9GGR|1|AV|U|1312
9GGR|1|AV|U|1313
*
9GGR|1|AV|A|1603
9GGR|1|AV|C|1604

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ao

Large ribosomal subunit protein uL23

Chain Ax

Large ribosomal subunit protein bL34