IL_9GGR_212

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_212 not in the Motif Atlas

Homologous match to IL_5J7L_320

Geometric discrepancy: 0.1162

The information below is about IL_5J7L_320

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

9GGR|1|AV|C|2050
9GGR|1|AV|A|2051
9GGR|1|AV|A|2052
*
9GGR|1|AV|U|2617
9GGR|1|AV|G|2618

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Av

Large ribosomal subunit protein bL32