IL_9GGR_225

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_225 not in the Motif Atlas

Homologous match to IL_9DFE_089

Geometric discrepancy: 0.1471

The information below is about IL_9DFE_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9GGR|1|AV|C|2350
9GGR|1|AV|G|2351
9GGR|1|AV|A|2352
9GGR|1|AV|G|2353
*
9GGR|1|AV|C|2364
9GGR|1|AV|G|2365
9GGR|1|AV|A|2366
9GGR|1|AV|G|2367

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ar

Large ribosomal subunit protein bL27

Chain Ay

Large ribosomal subunit protein bL35