IL_9GGR_231

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_231 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1419

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9GGR|1|AV|C|2466
9GGR|1|AV|C|2467
9GGR|1|AV|A|2468
9GGR|1|AV|A|2469
9GGR|1|AV|G|2470
*
9GGR|1|AV|C|2480
9GGR|1|AV|G|2481
9GGR|1|AV|A|2482
9GGR|1|AV|C|2483
9GGR|1|AV|G|2484

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain Ah

50S ribosomal protein L16

Chain Az

Large ribosomal subunit protein bL36A