IL_9GGR_258
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_258 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.1215
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9GGR|1|N|G|188
9GGR|1|N|G|189
9GGR|1|N|A|190
9GGR|1|N|A|191
9GGR|1|N|C|192
9GGR|1|N|U|193
9GGR|1|N|G|194
*
9GGR|1|N|C|201
9GGR|1|N|U|202
9GGR|1|N|A|203
9GGR|1|N|A|204
9GGR|1|N|G|205
9GGR|1|N|U|206
9GGR|1|N|A|207
9GGR|1|N|C|208
Current chains
- Chain N
- 23S ribosomal RNA
Nearby chains
- Chain Y
- Large ribosomal subunit protein uL15
- Chain k
- Large ribosomal subunit protein bL28
- Chain p
- Large ribosomal subunit protein bL34
- Chain q
- Large ribosomal subunit protein bL35
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