IL_9GGR_260

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_260 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.2157

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9GGR|1|N|C|269
9GGR|1|N|A|270
9GGR|1|N|G|271
*
9GGR|1|N|C|366
9GGR|1|N|G|367
9GGR|1|N|A|368
9GGR|1|N|U|369
9GGR|1|N|G|370

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein bL28