IL_9GGR_314

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_314 not in the Motif Atlas

Geometric match to IL_8C3A_082

Geometric discrepancy: 0.0788

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9GGR|1|N|G|1666
9GGR|1|N|G|1667
9GGR|1|N|A|1668
9GGR|1|N|A|1669
*
9GGR|1|N|U|1993
9GGR|1|N|C|1994

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

Large ribosomal subunit protein uL14