IL_9GGR_332

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9GGR|1|N|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_332 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.0796

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9GGR|1|N|G|2067
9GGR|1|N|U|2068
9GGR|1|N|G|2069
*
9GGR|1|N|C|2442
9GGR|1|N|C|2443

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL4

Chain Y

Large ribosomal subunit protein uL15

Chain s

VemP nascent chain