IL_9GGR_347
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_347 not in the Motif Atlas
- Homologous match to IL_4WF9_093
- Geometric discrepancy: 0.1343
- The information below is about IL_4WF9_093
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9GGR|1|N|C|2466
9GGR|1|N|C|2467
9GGR|1|N|A|2468
9GGR|1|N|A|2469
9GGR|1|N|G|2470
*
9GGR|1|N|C|2480
9GGR|1|N|G|2481
9GGR|1|N|A|2482
9GGR|1|N|C|2483
9GGR|1|N|G|2484
Current chains
- Chain N
- 23S ribosomal RNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain Z
- 50S ribosomal protein L16
- Chain r
- Large ribosomal subunit protein bL36A
Coloring options: