IL_9GGR_357

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

9GGR|1|N|C|2712, 9GGR|1|N|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_357 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.144

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9GGR|1|N|U|2695
9GGR|1|N|U|2696
*
9GGR|1|N|A|2711
9GGR|1|N|C|2712
9GGR|1|N|U|2713
9GGR|1|N|G|2714

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain a

Large ribosomal subunit protein bL17

Chain c

Large ribosomal subunit protein bL19