IL_9GHA_019

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

9GHA|1|A|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.447

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GHA|1|A|U|409
9GHA|1|A|G|410
9GHA|1|A|A|411
9GHA|1|A|A|412
9GHA|1|A|G|413
9GHA|1|A|A|414
9GHA|1|A|A|415
9GHA|1|A|G|416
*
9GHA|1|A|U|427
9GHA|1|A|G|428
9GHA|1|A|U|429
9GHA|1|A|A|430
9GHA|1|A|A|431
9GHA|1|A|A|432
9GHA|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4