IL_9GHA_034

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_034 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0904

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9GHA|1|A|A|673
9GHA|1|A|G|674
9GHA|1|A|A|675
9GHA|1|A|A|676
9GHA|1|A|U|677
*
9GHA|1|A|G|713
9GHA|1|A|G|714
9GHA|1|A|A|715
9GHA|1|A|A|716
9GHA|1|A|U|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

Small ribosomal subunit protein uS11

Chain R

30S ribosomal protein S18

Chain U

30S ribosomal protein S21

Chain c

50S ribosomal protein L2