3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
GU(5MC)*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHA_058 not in the Motif Atlas
Homologous match to IL_5J7L_363
Geometric discrepancy: 0.1289
The information below is about IL_5J7L_363
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

9GHA|1|A|G|1405
9GHA|1|A|U|1406
9GHA|1|A|5MC|1407
*
9GHA|1|A|G|1494
9GHA|1|A|U|1495
9GHA|1|A|C|1496

Current chains

Chain A
16S rRNA

Nearby chains

Chain W
Elongation factor G
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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