IL_9GHA_073

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3755

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GHA|1|a|C|274
9GHA|1|a|C|275
9GHA|1|a|U|276
9GHA|1|a|G|277
9GHA|1|a|A|278
9GHA|1|a|A|279
9GHA|1|a|U|280
9GHA|1|a|C|281
*
9GHA|1|a|G|359
9GHA|1|a|U|360
9GHA|1|a|G|361
9GHA|1|a|A|362
9GHA|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains