IL_9GHA_114

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9GHA|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_114 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1203

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9GHA|1|a|C|1417
9GHA|1|a|G|1418
9GHA|1|a|A|1419
9GHA|1|a|A|1420
9GHA|1|a|G|1421
*
9GHA|1|a|C|1577
9GHA|1|a|U|1578
9GHA|1|a|A|1579
9GHA|1|a|A|1580
9GHA|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains