3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CAA*UG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHA_140 not in the Motif Atlas
Homologous match to IL_5J7L_320
Geometric discrepancy: 0.0773
The information below is about IL_5J7L_320
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

9GHA|1|a|C|2050
9GHA|1|a|A|2051
9GHA|1|a|A|2052
*
9GHA|1|a|U|2617
9GHA|1|a|G|2618

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain z
50S ribosomal protein L32

Coloring options:


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