IL_9GHA_141

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9GHA|1|a|C|2055, 9GHA|1|a|U|2613, 9GHA|1|a|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_141 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0644

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9GHA|1|a|A|2054
9GHA|1|a|C|2055
9GHA|1|a|G|2056
*
9GHA|1|a|C|2612
9GHA|1|a|U|2613
9GHA|1|a|A|2614
9GHA|1|a|U|2615

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32