3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHA_154 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.0627
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

9GHA|1|a|C|2466
9GHA|1|a|C|2467
9GHA|1|a|A|2468
9GHA|1|a|A|2469
9GHA|1|a|G|2470
*
9GHA|1|a|C|2480
9GHA|1|a|G|2481
9GHA|1|a|A|2482
9GHA|1|a|C|2483
9GHA|1|a|G|2484

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain l
50S ribosomal protein L16

Coloring options:


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