IL_9GHB_025

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9GHB|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHB_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0666

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9GHB|1|A|C|569
9GHB|1|A|G|570
9GHB|1|A|U|571
9GHB|1|A|A|572
9GHB|1|A|A|573
9GHB|1|A|A|574
9GHB|1|A|G|575
*
9GHB|1|A|C|880
9GHB|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17