IL_9GHB_153

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9GHB|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHB_153 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.0925

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9GHB|1|a|A|2459
9GHB|1|a|U|2460
9GHB|1|a|A|2461
*
9GHB|1|a|U|2489
9GHB|1|a|G|2490
9GHB|1|a|U|2491
9GHB|1|a|U|2492
9GHB|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16