IL_9GHC_022

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9GHC|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHC_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2327

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GHC|1|A|G|446
9GHC|1|A|G|447
9GHC|1|A|A|448
9GHC|1|A|G|449
9GHC|1|A|G|450
*
9GHC|1|A|C|483
9GHC|1|A|G|484
9GHC|1|A|U|485
9GHC|1|A|U|486
9GHC|1|A|A|487
9GHC|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16