IL_9GHC_074

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHC_074 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3872

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GHC|1|a|C|274
9GHC|1|a|C|275
9GHC|1|a|U|276
9GHC|1|a|G|277
9GHC|1|a|A|278
9GHC|1|a|A|279
9GHC|1|a|U|280
9GHC|1|a|C|281
*
9GHC|1|a|G|359
9GHC|1|a|U|360
9GHC|1|a|G|361
9GHC|1|a|A|362
9GHC|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains