IL_9GHC_105

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

9GHC|1|a|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHC_105 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.1552

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHC|1|a|G|1087
9GHC|1|a|A|1088
9GHC|1|a|A|1089
9GHC|1|a|A|1090
*
9GHC|1|a|U|1101
9GHC|1|a|C|1102

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36