IL_9GHD_019

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1373

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GHD|1|A|U|409
9GHD|1|A|G|410
9GHD|1|A|A|411
9GHD|1|A|A|412
9GHD|1|A|G|413
9GHD|1|A|A|414
9GHD|1|A|A|415
9GHD|1|A|G|416
*
9GHD|1|A|U|427
9GHD|1|A|G|428
9GHD|1|A|U|429
9GHD|1|A|A|430
9GHD|1|A|A|431
9GHD|1|A|A|432
9GHD|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4