3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
9GHD|1|a|A|504, 9GHD|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHD_076 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0604
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

9GHD|1|a|G|481
9GHD|1|a|A|482
9GHD|1|a|A|483
9GHD|1|a|C|484
*
9GHD|1|a|G|496
9GHD|1|a|A|497
9GHD|1|a|G|498
9GHD|1|a|U|499
9GHD|1|a|G|500
9GHD|1|a|A|501
9GHD|1|a|A|502
9GHD|1|a|A|503
9GHD|1|a|A|504
9GHD|1|a|A|505
9GHD|1|a|G|506
9GHD|1|a|A|507
9GHD|1|a|A|508
9GHD|1|a|C|509

Current chains

Chain a
23S rRNA

Nearby chains

Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


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