IL_9GHD_088

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9GHD|1|a|U|846, 9GHD|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_088 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.0997

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9GHD|1|a|A|844
9GHD|1|a|A|845
9GHD|1|a|U|846
9GHD|1|a|U|847
9GHD|1|a|C|848
*
9GHD|1|a|G|930
9GHD|1|a|U|931
9GHD|1|a|U|932
9GHD|1|a|A|933
9GHD|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

50S ribosomal protein L30