IL_9GHD_115

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9GHD|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_115 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1268

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9GHD|1|a|C|1417
9GHD|1|a|G|1418
9GHD|1|a|A|1419
9GHD|1|a|A|1420
9GHD|1|a|G|1421
*
9GHD|1|a|C|1577
9GHD|1|a|U|1578
9GHD|1|a|A|1579
9GHD|1|a|A|1580
9GHD|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains