IL_9GHD_129

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9GHD|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_129 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0477

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9GHD|1|a|C|1686
9GHD|1|a|G|1687
9GHD|1|a|U|1688
9GHD|1|a|A|1689
9GHD|1|a|A|1690
9GHD|1|a|C|1691
*
9GHD|1|a|G|1696
9GHD|1|a|G|1697
9GHD|1|a|A|1698
9GHD|1|a|G|1699
9GHD|1|a|A|1700
9GHD|1|a|A|1701
9GHD|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2