IL_9GHD_167

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_167 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0785

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

9GHD|1|a|C|2806
9GHD|1|a|U|2807
9GHD|1|a|G|2808
9GHD|1|a|A|2809
9GHD|1|a|A|2810
9GHD|1|a|G|2811
*
9GHD|1|a|C|2889
9GHD|1|a|G|2890
9GHD|1|a|U|2891
9GHD|1|a|G|2892

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32