IL_9GHE_019

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GHE|1|A|U|409
9GHE|1|A|G|410
9GHE|1|A|A|411
9GHE|1|A|A|412
9GHE|1|A|G|413
9GHE|1|A|A|414
9GHE|1|A|A|415
9GHE|1|A|G|416
*
9GHE|1|A|U|427
9GHE|1|A|G|428
9GHE|1|A|U|429
9GHE|1|A|A|430
9GHE|1|A|A|431
9GHE|1|A|A|432
9GHE|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4