3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GG*UGACC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_015 not in the Motif Atlas
Homologous match to IL_4LFB_013
Geometric discrepancy: 0.0827
The information below is about IL_4LFB_013
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_06671.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
10

Unit IDs

9GHF|1|A|G|292
9GHF|1|A|G|293
*
9GHF|1|A|U|304
9GHF|1|A|G|305
9GHF|1|A|A|306
9GHF|1|A|C|307
9GHF|1|A|C|308

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3167 s