IL_9GHF_022

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9GHF|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2162

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GHF|1|A|G|446
9GHF|1|A|G|447
9GHF|1|A|A|448
9GHF|1|A|G|449
9GHF|1|A|G|450
*
9GHF|1|A|C|483
9GHF|1|A|G|484
9GHF|1|A|U|485
9GHF|1|A|U|486
9GHF|1|A|A|487
9GHF|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16