3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_037 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.0648
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9GHF|1|A|C|779
9GHF|1|A|A|780
9GHF|1|A|A|781
9GHF|1|A|A|782
9GHF|1|A|C|783
*
9GHF|1|A|G|799
9GHF|1|A|G|800
9GHF|1|A|U|801
9GHF|1|A|A|802
9GHF|1|A|G|803

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
Small ribosomal subunit protein uS11
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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