IL_9GHF_074

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_074 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3798

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GHF|1|a|C|274
9GHF|1|a|C|275
9GHF|1|a|U|276
9GHF|1|a|G|277
9GHF|1|a|A|278
9GHF|1|a|A|279
9GHF|1|a|U|280
9GHF|1|a|C|281
*
9GHF|1|a|G|359
9GHF|1|a|U|360
9GHF|1|a|G|361
9GHF|1|a|A|362
9GHF|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains