IL_9GHF_100

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

9GHF|1|a|A|1127, 9GHF|1|a|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_100 not in the Motif Atlas

Homologous match to IL_5J7L_281

Geometric discrepancy: 0.052

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9GHF|1|a|G|1024
9GHF|1|a|G|1025
9GHF|1|a|G|1026
9GHF|1|a|A|1027
9GHF|1|a|A|1028
9GHF|1|a|A|1029
9GHF|1|a|C|1030
*
9GHF|1|a|G|1124
9GHF|1|a|G|1125
9GHF|1|a|A|1126
9GHF|1|a|A|1127
9GHF|1|a|G|1128
9GHF|1|a|A|1129
9GHF|1|a|U|1130
9GHF|1|a|G|1131
9GHF|1|a|U|1132
9GHF|1|a|A|1133
9GHF|1|a|A|1134
9GHF|1|a|C|1135
9GHF|1|a|G|1136
9GHF|1|a|G|1137
9GHF|1|a|G|1138
9GHF|1|a|G|1139
9GHF|1|a|C|1140

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain l

Large ribosomal subunit protein uL16