3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAGAAC*GAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_124 not in the Motif Atlas
Homologous match to IL_5J7L_304
Geometric discrepancy: 0.0399
The information below is about IL_5J7L_304
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12566.4
Basepair signature
cWW-L-tHS-L-cWW-L
Number of instances in this motif group
5

Unit IDs

9GHF|1|a|G|1651
9GHF|1|a|A|1652
9GHF|1|a|G|1653
9GHF|1|a|A|1654
9GHF|1|a|A|1655
9GHF|1|a|C|1656
*
9GHF|1|a|G|2004
9GHF|1|a|A|2005
9GHF|1|a|C|2006

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain m
50S ribosomal protein L17

Coloring options:


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