IL_9GHF_128

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

9GHF|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_128 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0452

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|A|1669
9GHF|1|a|C|1670
9GHF|1|a|U|1671
9GHF|1|a|A|1672
9GHF|1|a|G|1673
9GHF|1|a|G|1674
*
9GHF|1|a|C|1990
9GHF|1|a|U|1991
9GHF|1|a|G|1992
9GHF|1|a|U|1993

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14